Python API

• reacnetgenerator package
  • References
  • ReacNetGenerator
    • ReacNetGenerator.Status
      • ReacNetGenerator.Status.DETECT
      • ReacNetGenerator.Status.DOWNLOAD
      • ReacNetGenerator.Status.HMM
      • ReacNetGenerator.Status.INIT
      • ReacNetGenerator.Status.MATRIX
      • ReacNetGenerator.Status.MISO
      • ReacNetGenerator.Status.NETWORK
      • ReacNetGenerator.Status.PATH
      • ReacNetGenerator.Status.REPORT
    • ReacNetGenerator.draw()
    • ReacNetGenerator.hmmfilename
    • ReacNetGenerator.moleculetemp2filename
    • ReacNetGenerator.moleculetempfilename
    • ReacNetGenerator.originfilename
    • ReacNetGenerator.report()
    • ReacNetGenerator.resultfilename
    • ReacNetGenerator.run()
    • ReacNetGenerator.runanddraw()
    • ReacNetGenerator.urls
  • Submodules
  • reacnetgenerator.commandline module
    • main_parser()
    • parm2cmd()
  • reacnetgenerator.dps module
    • dps()
    • dps_reaction()
  • reacnetgenerator.gui module
  • reacnetgenerator.reacnetgen module
  • reacnetgenerator.tools module
    • calculate_rate()
    • read_reactions()
    • read_species()
  • reacnetgenerator.utils module
    • SCOUROPTIONS
      • SCOUROPTIONS.enable_viewboxing
      • SCOUROPTIONS.newlines
      • SCOUROPTIONS.remove_descriptions
      • SCOUROPTIONS.remove_descriptive_elements
      • SCOUROPTIONS.remove_metadata
      • SCOUROPTIONS.remove_titles
      • SCOUROPTIONS.shorten_ids
      • SCOUROPTIONS.strip_comments
      • SCOUROPTIONS.strip_ids
      • SCOUROPTIONS.strip_xml_prolog
      • SCOUROPTIONS.strip_xml_space_attribute
    • SharedRNGData
      • SharedRNGData.returnkeys()
    • WriteBuffer
      • WriteBuffer.append()
      • WriteBuffer.check()
      • WriteBuffer.extend()
      • WriteBuffer.flush()
    • appendIfNotNone()
    • bytestolist()
    • checksha256()
    • compress()
    • decompress()
    • download_file()
    • download_multifiles()
    • gather_download_files()
    • listtobytes()
    • listtostirng()
    • multiopen()
    • must_be_list()
    • produce()
    • read_compressed_block()
    • run_mp()
  • reacnetgenerator.utils_np module
    • check_zero_signal()
    • idx_to_signal()